AbNumber

flat.abnumber

Module for Antibody numbering and alignment using ANARCI

Installation

This is an optional dependency of flat and can be installed with:

pip install abnumber

Note

Windows is not supported due to HMMER dependency. AbNumber is currently only available on UNIX & MacOS.

flat.abnumber.abnumber(selection='all', scheme='chothia', *, _self=cmd)

DESCRIPTION

Select antibody CDR region according to Antibody Numbering and Antigen Receptor Classification (ANARCI).

USAGE

abnumber [ selection [, scheme ]]

ARGUMENTS

selectionstr, optional

Atom selection.

schemestr, default = ‘chothia’

Which numbering scheme should be used.

SCHEMES

imgt, kabat, chothia, aho

SEE ALSO

https://github.com/prihoda/AbNumber

flat.abnumber.abrenumber(selection='(all)', scheme='chothia', *, _self=cmd)

DESCRIPTION

Renumber and rename (chains) antibodies according to Antibody Numbering and Antigen Receptor Classification (ANARCI)

USAGE

abrenumber [ selection [, scheme ]]

ARGUMENTS

selectionstr, optional

Atom selection.

schemestr, default = ‘chothia’

Which numbering scheme should be used.

SCHEMES

imgt, kabat, chothia, aho

SEE ALSO

https://github.com/prihoda/AbNumber