MSMS

`flat.msms`

Module for computing molecular surfaces using MSMS

MSMS can be installed with by downloading precompiled binaries from: msms/downloads

flat.msms.msms(selection='polymer', state=1, density=3.0, name='msms', filename=None, *, exe='msms', _self=cmd)

DESCRIPTION

Run MSMS on the given selection and load the generated surface as a CGO.

USAGE

msms [ selection [, state [, density [, name [, filename ]]]]]

ARGUMENTS

selectionstr, optional: Atom selection.
stateint, default = 1: Object state.
densityfloat, default = 3.0: MSMS triangulation density. Typical values are 1.0 for large molecules (>1000 atoms) and 3.0 for smaller molecules.
namestr, default = ‘msms’: Name of CGO object to create
filenamestr, default = None: Name of output file(s) (without extension).

SOURCE