Exporting
flat.exporting
Module that allows to save files in additional formats.
- flat.exporting.save_colored_fasta(filename, selection='all', invert=False, *, _self=cmd)
- DESCRIPTION
Save a HTML file with colored (by C-alpha atoms) FASTA sequence.
- USAGE
save_colored_fasta filename [, selection [, invert ]]]
- ARGUMENTS
- filenamestr
Output file name.
- selectionstr, default = ‘all’
Atom selection.
- invertbool, default = False
Color background instead of character.
- SOURCE
From PSICO (c) 2012 Thomas Holder, MPI for Developmental Biology
- flat.exporting.save_csv(filename, selection='all', selector=None, var='b', *, quiet=1, _self=cmd)
- DESCRIPTION
Save property from selection to CSV file.
- USAGE
save_csv filename [, selection [, selector [, var ]]]
- ARGUMENTS
- filenamestr
Output file name.
- selectionstr, default = ‘all’
Atom selection.
- selectorList(str), default = None
List or string of atom selectors to export properties. It defaults to: [chain, resn, resi, name].
- varstr, default = ‘b’
Property to export.
- flat.exporting.save_gro(filename, selection='all', state=0, *, _self=cmd)
- DESCRIPTION
Save structure in GROMACS configuration (.gro) format.
- USAGE
save_gro filename [, selection [, state ]]
- ARGUMENTS
- filenamestr
…
- selectionstr, optional
Atom selection.
- stateint, default = 0
…
- flat.exporting.save_mda(filename, selection='all', *, quiet=1, _self=cmd)
- DESCRIPTION
Save a trajectory file with the MDAnalysis library.
- USAGE
save_mda filename [, selection ]
- ARGUMENTS
- filenamestr
Output file name.
- selectionstr, default = ‘all’
Atom selection.
- flat.exporting.save_ndx(filename, *, quiet=1, _self=cmd)
- DESCRIPTION
Save all selections as GROMACS index (.ndx) format.
- USAGE
save_ndx filename
- ARGUMENTS
- filenamestr
Output file name.
- flat.exporting.save_pir(filename, selection='all', *, _self=cmd)
- DESCRIPTION
Save sequence in Protein Information Resource (PIR) format.
- USAGE
save_ndx filename [, selection ]
- ARGUMENTS
- filenamestr
Output file name.
- selectionstr, default = ‘all’
Atom selection.
- flat.exporting.save_xyzr(filename, selection='all', state=1, *, _self=cmd)
- DESCRIPTION
Write the given selection to an xyzr or xyzrn (determined by extension) file for MSMS.
- USAGE
save_xyzr filename [, selection [, state ]]]
- ARGUMENTS
- filenamestr
Output file name.
- selectionstr, default = ‘all’
Atom selection.
- stateint, default = 1
Object state.