Hydrophobic
flat.hydrophobic
Module for computing hydrophobic properties.
- flat.hydrophobic.hydropathy(selection='all', method='Black-Mould', vis=True, *, _self=cmd)
- DESCRIPTION
Assign hydrophobicity to amino-acid residues in selection.
- USAGE
hydropathy [ selection [, method [, vis ]]]
- ARGUMENTS
- selectionstr, optional
Atom selection.
- methodstr, default = ‘Black-Mould’
Hydrophobic scale.
- visbool, default = True
Visualize results.
- flat.hydrophobic.hydropathy_moment(selection='all', method='Black-Mould', state=1, vis=True, *, quiet=1, _self=cmd)
- DESCRIPTION
Get first-order hydrophobic moment vector for selection.
- USAGE
hydropathy_moment [ selection [, method [, state [, vis ]]]]
- ARGUMENTS
- selectionstr, optional
Atom selection.
- methodstr, default = ‘Black-Mould’
Hydrophobic scale.
- stateint, default = 0
Object state. 0 for current state.
- visbool, default = True
Visualize results.
- REFERENCE
B.D. Silverman, PNAS, 2001, 98(9), 4996-5001. doi:10.1073/pnas.081086198