Selecting

`flat.selecting`

Module to help with selection of molecular objects.

flat.selecting.diff(sele1, sele2, byres=True, name=None, operator='in', quiet=0, *, _self=cmd)

DESCRIPTION

Select difference between two molecules.

USAGE

diff sele1, sele2 [, byres [, name [, operator ]]]

ARGUMENTS

sele1, sele2str: Atom selections.
byresbool, default = True: Report residues, not atoms (does not affect selection).
namestr, optional: Name of the selection.
operatorstr, default = ‘in’: operator to match atoms: in, like, or align:

RETURNS

SOURCE

SEE ALSO

symdiff()

flat.selecting.find_seq(pattern, selection='all', name='sele', merge=False, *, _self=cmd)

DESCRIPTION

Given a sequence/regex to find, select those matching amino acids in the protein.

USAGE

find_seq pattern, [ selection [, name [, merge ]]]

ARGUMENTS

patternstr: Sequence of amino acids to match and selection. This can be a sequence of amino acids or a regular expression.
selectionstr, default = ‘all’: Atom selection.
namestr, default = ‘sele’: Unique name for the selection.
mergebool, default = False: Merge to existing selection.

RETURNS

EXAMPLE

>>> find_seq N[^P][TS]

flat.selecting.symdiff(sele1, sele2, byres=1, name=None, operator='in', quiet=0, *, _self=cmd)

DESCRIPTION

Symmetric difference between two molecules

USAGE

symdiff sele1, sele2 [, byres [, name [, operator ]]]

ARGUMENTS

sele1, sele2str: Atom selections.
byresbool, default = True: Report residues, not atoms (does not affect selection).
namestr, optional: Name of the selection.
operatorstr, default = ‘in’: operator to match atoms: in, like, or align:

RETURNS

SOURCE

SEE ALSO

diff()

flat.selecting.wait_for(name, state=0, *, _self=cmd)

DESCRIPTION

Wait for “name” to be available as selectable object.

USAGE

wait_for name [, state ]

ARGUMENTS

SOURCE