Viewing
flat.viewing
Module to help with molecule visualization
- flat.viewing.axis(name='axis', *, _self=cmd)
- DESCRIPTION
Puts coordinate axes to the lower left corner of the viewport.
- USAGE
axis [ name ]
- ARGUMENTS
- namestr, default = ‘axis’
Name of the axis object
- flat.viewing.beautify(selection='all', mode=0, *, _self=cmd)
- DESCRIPTION
Display molecules in pretty representation.
- USAGE
beautify [ selection [, mode ]]
- ARGUMENTS
- selectionstr, optional
Atom selection.
- modeint, default = 0
Display mode.
- flat.viewing.bounding_box(selection='all', state=0, vis=1, color='yellow', lw=2.0, *, quiet=0, _self=cmd)
- DESCRIPTION
Draws a bounding box around a given selection.
- USAGE
bounding_box [ selection [, state [, vis [, color ]]]]
- ARGUMENTS
- selectionstr, optional
Atom selection
- stateint, default = 0
Object state where 0 is all states
- visbool, default = True
Whether to visualize the bounding box
- colorstr, default = ‘yellow’
Color of the bounding box
- RETURNS
- : ndarray
Array of shape (3,) with bounding box dimensions in Angstroms
- flat.viewing.filter(mode=1, *, _self=cmd)
- DESCRIPTION
Apply different preset filters to molecules for rendering:
0 = PyMol default style
1 = Simple FLAT style
2 = Pretty figure style
- USAGE
filter [ mode ]
- ARGUMENTS
- modeint, default = 1
Render mode preset
- flat.viewing.gridbox(selection='all', grid=(5, 5, 5), color='yellow', lw=2.0, *, _self=cmd)
- DESCRIPTION
Draw a grid box around selection.
- USAGE
gridbox [ selection [, grid [, color ]]]
- ARGUMENTS
- selectionstr, optional
Atom selection
- gridarray-like, shape (3,), default = (5, 5, 5)
Number of grids on X, Y, and Z axis
- colorstr, default = ‘yellow’
Color of the grid box
- flat.viewing.title(label, selection='polymer', size=26, va=0.8, ha=0.0, *, _self=cmd)
- DESCRIPTION
Display title over selection.
- USAGE
title label [ selection [, size [, va [, ha ]]]]
- ARGUMENTS
- labelstr
Text to display
- selectionstr, default = ‘polymer’
Atom selection
- sizeint, default = 26
Text size
- vafloat, default = 0.0
Vertical alignment where 0 is center
- hafloat, default = 0.8
Horizontal alignment where 0 is center